Scaffold Ga0307380_10124471

Overview

Basic Information

• Taxon OID: 3300031539
• Scaffold ID: Ga0307380_10124471
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - UN-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2607
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003051	Metagenome / Metatranscriptome	510	Y
F010532	Metagenome	302	N
F067760	Metagenome / Metatranscriptome	125	N
F078570	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307380_101244712	F078570	AGGAGG	MSDEHIILEGKVMWAFLDKPNHFDYYGLFLIPNKKSLQLVKENNFYNFKEERGHVSLQNKKLDFNIYDKENNLIMNLDYFLGNNSHVKVRCKSFIGKLVNQKCLYLESLQILKHVKIKSDINWETV
Ga0307380_101244713	F010532	GGAG	MNRTLYKKLEDICAREYIINKLSANKFRTFVDFLYDDIRTWDKPMNVSEIDIIHRIEEHMSYMVSSYLTKPYEGISMDEQALRGA
Ga0307380_101244714	F067760	N/A	MKVRRIDMFIMRKYGDYCDEALRYKEFQKTFQAWKDDNIIELVKEYKEYRRILRYGS
Ga0307380_101244717	F003051	GAGG	MKTKILKSKVVIDMSVSEYDTLFKYINKLSNMLSTLHETNDLWLSDVHNLSSLQWELVEMLNAEWNPDTYRYVKRGTK