NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307380_10109662

Scaffold Ga0307380_10109662


Overview

Basic Information
Taxon OID3300031539 Open in IMG/M
Scaffold IDGa0307380_10109662 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - UN-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2824
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020001Metagenome / Metatranscriptome226Y
F034542Metagenome174Y

Sequences

Protein IDFamilyRBSSequence
Ga0307380_101096621F020001N/AMSDGKTLLTIAETAELLNCSSGFVRKRIALSEANQPGGWPTTVYVNLQPNGAKSLYRIKKDALETYLQGTSAAKVETVEIEAGIAA
Ga0307380_101096624F034542N/AGTKDFSVLSDYDYASLWSRWRRGYEMSMYAQEAYGGLTYSFKYFVSGTPGVGVFLPGLCFMYPTTRSDMKMWMVGIRPRDSFKFIDFDYAIQSVTNYDETTYAVRLTSNFGAPISFFTGEVLSNRFNADGTDKKFGFNNYTVTAVGINGVPANPSYVPIFNTLFLSHARENSWSVVDENRMTIPASGPPAVGEYLTTEMRTQCTCPDFLGREGFDLYQASIKRKYPYTGVFNMAPGFYDAGVDQSTRLVNAPDDPGFARTFGFLYTNQIYNIPSYTQPVYSDPNFFYYQPKWCKHIYAAMWDLQRKYGQENMTAPWLPQPTDEPMNEYYREKFDRDLKKQSDFLRREKDLRWWQRYSPTKDDMPRHMTYPDMYNMMSKTLNFGDLSGPSTINKGFFEMFTIDEFDPFAPINFDDLETYDGGTYENGVLVEQPTNILDGGEYANGVLIPPVGFPSLINGGTY
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