Scaffold Ga0307380_10108898

Overview

Basic Information

• Taxon OID: 3300031539
• Scaffold ID: Ga0307380_10108898
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - UN-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2838
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F000903	Metagenome / Metatranscriptome	843	Y
F009883	Metagenome / Metatranscriptome	311	Y
F012452	Metagenome	280	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307380_101088981	F000903	AGGAGG	MIAAISHCHDRSADHSSRIVRNLSWFEYVAQNAESMVSEWTVAKALGYDYTPGITWDKSKADVGDHIEVKWSPNPHSNLWIQESDRHDRDIAVLVTGNSPKMHIVGWMPVAVAKKPRYRNTSQNNWSVPQINLQPIETLMRSNYAHPYV
Ga0307380_101088982	F000403	GGTGG	VSDYIEIIHPQSMTAKLLYQGEVISEYKIEQCDKCSQLKKFDKFGYQKGYDKADNIIWFCGDCR
Ga0307380_101088984	F012452	AGGCGG	MSFMDNYEGNKDRTDRWIATFPQGRLEAHIVEFNAEKGYVLIQAKAWRNQDETQPAGVDYAFGYREAYPEKMRRWMIEDTTTSALMRVMALVMGGTEKSTKETMEKVNAADVYDPWTSKFGDVPSYKTAEEAEMSGTPSFGSSMDEIANELFGELVQEAPQCRHGHRVWRTGTSAKTGKDWANYSCVGKKPDQCDPLWYVFTSRGKWEPQV
Ga0307380_101088985	F009883	GGAG	MNEASIVIMMVIAGALWAVMSYSVGFREGQRQGYTRGRAVARHAVSAERKAVK