Scaffold Ga0307380_10108450

Overview

Basic Information

• Taxon OID: 3300031539
• Scaffold ID: Ga0307380_10108450
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - UN-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2845
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012971	Metagenome	275	Y
F041091	Metagenome	160	N
F054004	Metagenome	140	N
F097250	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307380_101084503	F054004	AGGAG	MMTFSEAFGRIAFIVALLIGINHVQTPSPQSQSIQVISKKKSLLKACKRLYKRKDKNYATVCEKRGINF
Ga0307380_101084504	F041091	AGGA	MQPSVKSEESISEWKTQQQVYDELRNDILEEVAIEIEKMHGFGKDTLSSFAIYIREMKK
Ga0307380_101084507	F012971	AGGAG	MDFEREKWMALQDLNPSDVADAICDSPAIVEAIQSNAWADVADMVRSRVELKAERLAQTALEIPLTPWVDADEELSLWRFYRMELQREAIEQNKPKLPKINPYTNEASNEN
Ga0307380_101084508	F097250	AGGAG	MTTIVRFALNLAIQQISVAMTRFLSYFQIWTPILSLKERTRLRQKAAKRTKEQPKTQRVVMPSKLITDPTFGYVNAAQTNVSETWKKHSTGVNNAGLFNNPDADRKNDKESGGEVPTQKIRRVQ