Scaffold Ga0307380_10103812

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307380_10103812

Scaffold Ga0307380_10103812

Overview

Basic Information
Taxon OID	3300031539 Open in IMG/M
Scaffold ID	Ga0307380_10103812 Open in IMG/M
Source Dataset Name	Soil microbial communities from Risofladan, Vaasa, Finland - UN-3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2922
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (90.91%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location Name	Finland: Risofladan, Vaasa
Coordinates	Lat. (^o)	63.0472	Long. (^o)	21.7116	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000375	Metagenome / Metatranscriptome	1217	Y
F062168	Metagenome / Metatranscriptome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307380_101038122	F062168	AGGA	MNDLKDFLKEMGLESVHPKPSAEKPDYIQPGYYVDPRNKYGEVPF
Ga0307380_101038125	F000375	GGGGG	MPKLYDLEPMIMDCWHVCDDLQVIFKQIGDGERDPTQDELMNALLGMQQVYQWKFEQLFNKYEEVLRDRQ

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