Scaffold Ga0307380_10072307

Overview

Basic Information

• Taxon OID: 3300031539
• Scaffold ID: Ga0307380_10072307
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - UN-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3665
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001841	Metagenome / Metatranscriptome	627	Y
F009141	Metagenome / Metatranscriptome	322	Y
F021513	Metagenome / Metatranscriptome	218	Y
F022190	Metagenome / Metatranscriptome	215	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307380_100723073	F001841	AGGA	MIKRPNFFSGLMRVVAWVFWRDPVAKSEPPQPKRPRKPTLGYTVGDIPYELLAVVRVSWYRKGMTYEVEEYQIEESDDAQKQFHYIVGQALRQGADVCVLTQYEPAALGVPE
Ga0307380_100723075	F022190	AGGAGG	MSQVQSIEELRFEGDHLVVDAVVDDMVVRYPQTALEPAEWGPALCRGTLYFSSEDLIPATDAELRSMLTERVDDWAPIDTSDWDV
Ga0307380_100723078	F009141	N/A	MTENSMVPFYRCYLLNGKTIYLDKISELSDSELNMLNIETLASLEEARRDYAVIENKQSEEAGSVYRRLKVAGYFQAAIKLEMEAP
Ga0307380_100723079	F021513	N/A	MNMYILSEAQFDQIIKALDDARFALDTCQHVELDLTDPKQTIALPATKPAVRTTAVRQSQSKTRKSSRKGKRGVAVLTEPKVLEIKRQLAAGGKTVAKIAADFGVHITTINCIKTGKTWKHIQLQQESAEVKA