Scaffold Ga0307380_10051286

Overview

Basic Information

• Taxon OID: 3300031539
• Scaffold ID: Ga0307380_10051286
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - UN-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4541
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019311	Metagenome	230	Y
F019560	Metagenome	229	Y
F055205	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307380_100512861	F019311	AGGAG	MTKYVKIKDCVVGKKYRFEEHEHTVTSYDYNYSYMTGTCVTNQVYTDREKVFGEYEQLIEIKLDMIRPELEGEYDNKLMFYFPHDN
Ga0307380_1005128613	F055205	AGGA	MSNLDLINAERKQWRENTILNSIAIQKLAKELDTVIKQKDELQEKLNNINKISIIENGKTNLADDQIKIK
Ga0307380_100512862	F019560	AGGAG	MQKVKIKFSVITPCEKDYEIVDQELWDFGKDRFTEIAKSDDCQQIFSDERIYGLKPIEDSYYEDSPNREVHKVENVVIDGKNQWY