Scaffold Ga0307380_10013750

Overview

Basic Information

• Taxon OID: 3300031539
• Scaffold ID: Ga0307380_10013750
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - UN-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9975
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (39.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005382	Metagenome / Metatranscriptome	402	Y
F007025	Metagenome / Metatranscriptome	359	Y
F013505	Metagenome / Metatranscriptome	270	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307380_1001375010	F013505	GAG	MSSYLDKLEADRQAQHSGYGIQPYLCADGSRKWEAYGWERTTELSIHTTSYGLFDHKWEAEQFFNSCING
Ga0307380_1001375015	F007025	AGG	MILIDFFNEDCCKGTELIEGWYYYSDSDDQIVGGPFESEEAAIKAAFDGNGW
Ga0307380_100137502	F005382	AGG	MDKTSRIKQFIFNAGHSIVSVEFVKADGSLRKLQFNPWDTKEIKGTGTAIKKTSIVRCRDFSIARKEGQGAWRSFDCERVTSIKANGQTLVF