Scaffold Ga0307380_10012061

Overview

Basic Information

• Taxon OID: 3300031539
• Scaffold ID: Ga0307380_10012061
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - UN-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10777
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (76.47%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000722	Metagenome / Metatranscriptome	922	Y
F001326	Metagenome / Metatranscriptome	721	Y
F002302	Metagenome	573	Y
F014971	Metagenome	258	Y
F023058	Metagenome	211	N
F027510	Metagenome	194	N
F041766	Metagenome	159	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307380_100120611	F000722	GGA	VTEQPYPETGITEETRRMYPDNYSDKYDKVFKEFVDEIMKPVRPIDRLEDHSILLDELTIMYDAHMTIGGEQNRFNASVLRAAINLIISCTK
Ga0307380_1001206113	F002302	AGCAG	MAYTDLLNEAIDDLTASLTAVSGLRVINDATKIVPNCVFIEPPSFTTIAGNGNVIRMDFPVRVIGSGPAGLPVLQKILSIVAAVLASPIIVMAGRPSSLEIGGALYPSYDLDCAIQAQTS
Ga0307380_1001206114	F001326	AGGCGG	MATYTVTQKYLIDNYAVVQLLTPAEIELGASVVVADVDATFNGTYLVRALPQFLYIGVDTEGDLLYDVNVPIANQVLYAKTADDVARVAATGTLSLTQVCSWVTAADVMTYLGVTITDPSDDYTLLTQATSAGNQFCYRRRQEAGYVDSLTTSPGGDATLGTLMYCAALWRTRGSIESTYATFDQMGSAPQQSLTPVVKQLLGIPRPAVA
Ga0307380_100120613	F041766	AGGAG	MTEPKVFIYEVGRCNLDNGQEILVQIFRHEDTHTIIRAQIAFRTLAGDSWGVPTELDFQK
Ga0307380_100120615	F027510	N/A	MTVNNLPKFLILLVGLLCLTALMIADKINMESGVPMLTMIIGYSIGNGVNARQGTESSNVFGAKTPK
Ga0307380_100120616	F014971	AGG	MTHAEAVAMYPHDEVFIQVDGVVRPMTPAEYEEFIQRNMIPNPYG
Ga0307380_100120618	F023058	N/A	MPGVAVIGSGNYDLEIDTGYDWDAFTLDDDLKGELNNTEYVLDGTSQFATVMDGTIALTARRGRENTGDQFTYGTMSFTLNDTYADGVFNPFDTTSPYYDPDNNQPGLAPLREVRFSRYNSLNVKELLWVGYIINYDYTFTLGGLDTVSVNCADFSYQLGQTFLAEWNVSQELSSVRFDNLLDLPEVAYTGTRDIETGTVTLGGSAAYTVDNGTSVAAYADKINEAEQGRIFVNREGTITFQKRIGTTLGTPAAEFHDNGTNIGYSAIDISFMADTVVNRASVQHAGATSPEVAEDLTSQAAYLIQTRSITDSLVHDDTAALALANYLISANPEPRFNFLGTEFPGTLAADQDTLALLDIGDLINIQKSITTSAGPTEFAQNLTIEGLEHRLTLSAGHAVTYFTSSTTIVFELVLDDLTYGTLDEENVLG