Scaffold Ga0307380_10011370

Overview

Basic Information

• Taxon OID: 3300031539
• Scaffold ID: Ga0307380_10011370
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - UN-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11151
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001190	Metagenome / Metatranscriptome	753	Y
F018836	Metagenome / Metatranscriptome	233	Y
F020527	Metagenome / Metatranscriptome	223	Y
F082558	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307380_1001137016	F018836	AGGA	MTSSVPAGQVDADDWFDLDKYRQAAGVAYDFSKQKMETAGAQERETIGKGAAESRTSAEQQQEFKEKDESRDYGQAQRAYRY
Ga0307380_1001137017	F001190	N/A	MTSTPTGQSSTDDYFDINKFEELLNRLEASKGRQQRQKSLEGRRDIFTGGLASMMSNF
Ga0307380_1001137018	F020527	N/A	QDKFNTSYLDNYYDTMFGKQGTNEAGKKTGQRSFKFDKNLLPTYSGTNLSSRAQVTTPDFQDAFTGTPGEIQEQLQNVRDTRQYLYSAGLTNLQGEIDKETQKLKNEGGKEIAKISSQGDLYKQLVGAFSF
Ga0307380_100113708	F082558	N/A	MKTKKLVKKALKKPELYSYAELAYFKTWLCLHKKSKTAKIKKAK