Scaffold Ga0307380

Basic Information
Taxon OID	3300031539 Open in IMG/M
Scaffold ID	Ga0307380_10006514 Open in IMG/M
Source Dataset Name	Soil microbial communities from Risofladan, Vaasa, Finland - UN-3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031539 Open in IMG/M

Scaffold ID

Ga0307380_10006514 Open in IMG/M

Source Dataset Name

Soil microbial communities from Risofladan, Vaasa, Finland - UN-3

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15336
Total Scaffold Genes	40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (35.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

15336

Total Scaffold Genes

40 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (35.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location Name	Finland: Risofladan, Vaasa
Coordinates	Lat. (^o)	63.0472	Long. (^o)	21.7116	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Finland: Risofladan, Vaasa

Coordinates

Lat. (^o)

63.0472

Long. (^o)

21.7116

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010650	Metagenome / Metatranscriptome	301	Y
F012872	Metagenome / Metatranscriptome	276	Y
F014505	Metagenome / Metatranscriptome	262	Y
F016957	Metagenome / Metatranscriptome	243	N
F025860	Metagenome / Metatranscriptome	200	Y
F031874	Metagenome / Metatranscriptome	181	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307380_1000651413	F025860	N/A	MTTNNIYQVLDDLQGFAEMHGSSWLKEKLAQLEAHLAALENQSAK
Ga0307380_1000651416	F012872	AGGA	MNLHFEGNRLYYMEKEAELHRALHYLSLELGQKQEMTEEQLWDVFNICMDTSNVYRHITDYFTTLDKAILDARVTNSHLKQELLDLKHENNKLNKILDDYINEF
Ga0307380_1000651419	F014505	N/A	MGRIEKFYRQNFKRLTGFIKEYTDGSYEVASDIVQMVFLRLLEMEAEGRTNFYEEDSLNFFYVYRSCINTAFKYQRAKRKVNKVSIDEILYDTLEYEPYPEEKAALNKLINYMEQEIDTLHWYDSKMLRIHMEGTSMNKIHRESEIGLTSIKNTIKNGKARIHDTLKEHWEDYTNGDYDK
Ga0307380_1000651421	F016957	N/A	MQLRNYLKDKRKLTEGRTKVCVDVGKSGEALFKLLTNAQKTTLEEDKQHIDFHWGNMKVDVKGLKKMHLSGYILLEFVNVWGGNGWCHKNSKAEYIAFQFPEAFYVFRKNHLRTRALDLCEVYEKDKVERRNYIPYADALYKWVGRWNAQDVFTYLKFEDVEDLIFEILPYAITDKESE
Ga0307380_1000651428	F010650	N/A	MMNKMNQFLRIANARLKKVYPNKMQRRAWVAKMWRRYVERQNIEHDL
Ga0307380_100065144	F031874	N/A	MVKRCLNNLKEIFLYADSQPTEIMLGMLNFILLLPATLIELGWIPVYQISGIIAGGFQLFAVARQDINLRRNASFVSFVVFTMTIVLYGSCGYFAKSASHWGWVVLWLSSLSSVKRVTTEYYHRKWNNKV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307380_10006514

Overview

Ecosystem & Geography

Associated Families

Sequences