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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031539 Open in IMG/M |
| Scaffold ID | Ga0307380_10004108 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from Risofladan, Vaasa, Finland - UN-3 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 19800 |
| Total Scaffold Genes | 27 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (55.56%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Finland: Risofladan, Vaasa | |||||||
| Coordinates | Lat. (o) | 63.0472 | Long. (o) | 21.7116 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001215 | Metagenome | 746 | Y |
| F010682 | Metagenome | 300 | Y |
| F015724 | Metagenome | 252 | Y |
| F096245 | Metagenome | 105 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0307380_1000410815 | F010682 | AGG | MSYTPQTNWKYDKNLYHRIQSGPQRTADNLDVRDTYVVVSSGYVTPSGLKQTWYGVNDEGADFGNIPVGPPNISGFLNTEWRFVPPAVSGYWTDYNNSYAAASGLLTVYDGFRAQGLYSVAGRTVQTALGPQPGLRNFGAYTWFGGSVPDNQNYAPFQTPSDNTSSTGGITGGPGSYERVKTPMLTNPTNDTSGSRAAWQYNYPAYCKTYVESVRSDVPGSMSTVTRSSYRGKSTRYVPNYGSVYGVLGEGVRNMVRTFSPGVNSSNQKSV |
| Ga0307380_1000410819 | F096245 | N/A | MPKPRFAGARLGFLKALPVVGDVIAVASELANPEASPAQRVVNAGIVGGGGLFLSAATAGLDFIPQAVDFANDLTGGPKGPEKLRQMQACATVTNPDKHLRALSTKLGPDKYNNFYGTDFARAADQCGQSMIPPQYKTEEEKIKYLQYLGSGMGRMF |
| Ga0307380_1000410824 | F001215 | GAG | MASTSTNKQPLMVDRPFIRGAKINSGTGTISSTSSPEFGSLIQLVRVGDVPSEDGALVEDLFIVSNEGYPNDGGVRSAAFGVYIYAPNQASPSTSASMMIGKFEVGLSGDTEGLIQRVELPATVAPTPQTGDTNLIRPIEIGKSEALYLEKGYILAIGYIGDGPAAVSGGLSPSGVTIFAQGGFY |
| Ga0307380_1000410825 | F015724 | AGGCGG | MAPKRGNDFGWKGHQPKKSSFAFDKIQGASNASKLNRPLPFKQKFRPDFNLKDFSILFDYNYASMWTRWRRGYELYMYANQAYVGLNYSFRYFISGTAGIGTALPGACYMYPSMSQDMAMRMVAIRPRDSFNFLDFGYSIQSVTQTSGNVYAVQLSSNFGPPISFFTGEVISDRFASDGTEKTTYNNYKVVGVGNGTTPLVPSFAPIFNSIFISIDTDNSWSVINNETLQAPAGLPTVGDYFTTEMRFGCNCPDYLAREDFNLYKYNLKRRYPYTLPQDLKPGSYDAGSDYFADRTSPSRDLPGFTRDFGFLYVKKLINLPSYTDSAVTYSDPNLLYFAPRWCKHIYASFWDLQNRFGKDMFPYVWLDQPSDEPMDDRYREEFQRNLEKQTTFEKRQEHLRWWEKYSPSQNTVPVHMMYADMHPTMVKTLNFDTLVSGISSPMSASGFEMFQFDQYNPFEPIDPATLQKYDGGTYASGVLTSGSALIFDGGSYANGALIPPVTQPSNINGGTY |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |