NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310888_10306725

Scaffold Ga0310888_10306725


Overview

Basic Information
Taxon OID3300031538 Open in IMG/M
Scaffold IDGa0310888_10306725 Open in IMG/M
Source Dataset NameLab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)909
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From West Virginia University Organic Research Farm, Morgantown, Wv, United States

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6475Long. (o)-79.9369Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001123Metagenome / Metatranscriptome770Y
F003588Metagenome / Metatranscriptome478Y
F103346Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0310888_103067251F003588N/AVQSMLIEGNTESGVQAETEEQPLRITFENNLLTVKAKKQPLALVLLKIGEELGIPVDIQESNVAEVDAEISKLPVEDVIRQLSPHIRLYLRADLTRAERRALRLVLAEPLKATQ
Ga0310888_103067252F001123AGGAGGLAKQNEIVNEEFAGLQNASGECSEIKKVFVEPKISVPVDVLEATTFFQAATSGVTN
Ga0310888_103067253F103346N/AMNVIQVFDRPASQAFYSVAGRLLFIESSSLELRNLIVDLFAGWQLTPVSLPDKPPDIRINFSCEALTQRIPRHLDQFEIADGGKCY
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