Scaffold Ga0310888_10016966

Overview

Basic Information

• Taxon OID: 3300031538
• Scaffold ID: Ga0310888_10016966
• Source Dataset Name: Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2957
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From West Virginia University Organic Research Farm, Morgantown, Wv, United States

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6475
  • Long. (^o): -79.9369

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046702	Metagenome / Metatranscriptome	151	Y
F064608	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310888_100169664	F046702	AGTAG	MTAQDAQSATTPGIVRFAVWLTFFNTWVLFEETVVDRYGLWEYMPYYRVGRLCSWDIGAMALLLFIVWRVFRKTSFQAM
Ga0310888_100169665	F064608	GAG	VTVLESFVGTYEGIGEWFDSSGKSSTYSVRQTNSATQDGFEIAFKHDFADGTVIDARFQMTWVAPHIFRVSVAGASLGYGYLLDGYCHYHLETGQAFVEASYRITGDTIDVFGSSTKNAEGNYIAWKEVLRNTRQTMNRSSAIAPMSQEQRRPTR