NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302326_11548234

Scaffold Ga0302326_11548234


Overview

Basic Information
Taxon OID3300031525 Open in IMG/M
Scaffold IDGa0302326_11548234 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)885
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003186Metagenome / Metatranscriptome502N
F023143Metagenome / Metatranscriptome211Y
F070324Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0302326_115482341F003186N/ARCDGSAPTRRLRHDRFDSASALVINPRIILGEWVTALQSCPDLVAALGGGDPANIRAFLEGLATDNNVRLAILQMPPGSILVAWHGTTPRRLSGGALHFAHRFSLYLRAAEQDSGGTYADLFWLLVSAIPAGAPSWSSLLHFQIDPDCYPMDLDLPSAQRNTVVVSADGATLDYFEVQATLVEQGNPGGE
Ga0302326_115482342F023143GAGGMETVHMRSPEGEVKEVEATTETLTPLMVAGWHQVPAPAANPGPIAQKPPAPVVEEK
Ga0302326_115482343F070324GGAGGMSNINELMVGWGFGKQTAIGTANTSTAIWRQTNLNTKPWAKVP
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