Scaffold Ga0302326_10287228

Overview

Basic Information

• Taxon OID: 3300031525
• Scaffold ID: Ga0302326_10287228
• Source Dataset Name: Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2642
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0477
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001528	Metagenome / Metatranscriptome	677	Y
F005822	Metagenome / Metatranscriptome	389	Y
F064903	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0302326_102872281	F001528	AGGAG	MSEKNQIVVVLVVALSLGAFVDRITALKIVAGVALLWTLQNQPTVFECIRKVFSFRRGRFPVREYRGGARTVRVS
Ga0302326_102872282	F005822	AGGA	MSVNGTETIAESKGPQPPPANGRATRVAADSKATPARGMTTRRRRDRQDSEKSAEERFFLATGSRNGELPALGRECTSEADAIINAFREQVNFYRVSEFQTRADVGPSGEPILRKDGLKKNNPAS
Ga0302326_102872283	F064903	GAGG	MRSLIPSNYDRADVLMSAGCSTFVSAALILVIPRVGILLLEILFGLFFICCALMARARIRRRVLGKAKTSSDAKAKWFDRYDVLMILAVIAVQTAAGGLLRKAGWSEGTVSILPLIMFAAGILLKPRVVELVEHRRKTQPADADCGNAAAQQENLDPTDRALGPE