Scaffold Ga0302320_10221706

Overview

Basic Information

• Taxon OID: 3300031524
• Scaffold ID: Ga0302320_10221706
• Source Dataset Name: Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2660
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0477
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007294	Metagenome / Metatranscriptome	353	Y
F053728	Metagenome	140	Y
F088082	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302320_102217062	F053728	GGAG	VTILDRIGRMVRLLLLGSGPKSLMTLAKEPRPKSTLPTAQLYVIETDFEITPDSYNNLQAMLDVVREKYGLDFLILEPGFKLKRFDDY
Ga0302320_102217063	F088082	AGGA	MSISEIADALERAPRQGADKDHPGGSRDAVLSDTALNMMARELRLAVADRPDAETFEGRESR
Ga0302320_102217064	F007294	N/A	MALTLAQLQANLDAVNSAIGDPTLRVRFPDNREVTYRTIDELRKAKAEIEEDIREMSGGPGGRVRLAQHKRGDGQTGPAQFDRW