Scaffold Ga0302320_10155676

Overview

Basic Information

• Taxon OID: 3300031524
• Scaffold ID: Ga0302320_10155676
• Source Dataset Name: Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3429
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → Sorangium → Sorangium cellulosum (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0477
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008316	Metagenome / Metatranscriptome	335	Y
F061068	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302320_101556762	F061068	N/A	MTVHEKFIEDMNGAGIQTEGYLGRFFWEGPAARSDERNGPTLSDIIKVTAVPLQWDRLDFNYIVYPVGKAQAGWKDSVAGPEDEDVERDGYNDAYAEKAPRNDEDEED
Ga0302320_101556764	F008316	N/A	MSLKTVAFFALIGMALLTIMLAVVFIRDVSAVLAGAVATITVLASFIHLLASLSVAVFFFVFYRAQS