Scaffold Ga0307388_10026282

Overview

Basic Information

• Taxon OID: 3300031522
• Scaffold ID: Ga0307388_10026282
• Source Dataset Name: Metatranscriptome of marine eukaryotic phytoplankton communities from South Atlantic Ocean ? PS103-3.R2 (Eukaryote Community Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2376
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Atlantic Ocean
• Coordinates
  • Lat. (^o): -51.9926
  • Long. (^o): 2.0992
  • Depth (m): 50

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001478	Metagenome / Metatranscriptome	687	Y
F031121	Metagenome / Metatranscriptome	183	Y
F031514	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307388_100262823	F031514	AGAAG	MNQQWDIVYTDEWKGEPKKGELNEDFGLYVERDFYVVTELKSNRYLDLINNRNFVIKTPNARKSQIWYFHQQSLTIKTRYNNQSWDIKNSGKTNDMQIWSTNSRWW
Ga0307388_100262826	F001478	GGTGG	MFRLKDQRYITNEKGKVISVQGGLDNENRNIVMEGRNNEVHQQWRVVYVDEYEKEPTKGQLNKKFGLYVERDFYVVSALPDHRYLDLINNRNMVIKTRNSRKTQTWYFHQQSLTIRTRYNNQSWDIKTSGKTNNMQIWSTNSGWW
Ga0307388_100262827	F031121	AGG	MQAVQVHNRHNGANQRWKVLYLDKKAKTETKGLNEEFGFHINRPFYMVSELPFNRVAECQGANNVYLKRWRNNVRAQQWYFDEVTKTIKNKQWTNYSLTIQSNGGSSNLRVEGTNSRWW