Scaffold Ga0311364_11311200

Overview

Basic Information

• Taxon OID: 3300031521
• Scaffold ID: Ga0311364_11311200
• Source Dataset Name: III_Fen_E2 coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 718
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0469
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010657	Metagenome / Metatranscriptome	301	Y
F018347	Metagenome / Metatranscriptome	235	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311364_113112001	F018347	AGG	MADQAERVILEAEDQVTPVVGQANAGLDSFEKKAESAHGKVIRITDQTRTSIQRLIASLEKQAEVYGKSGAERLISQRDQLLQRYAREPAAIDAITRSYEKMIAVEEKAAREAVVAKAAKEAEEALRSQSEAIKSFGD
Ga0311364_113112002	F010657	N/A	PGKPGRRGYPDYKSARGLQPIRDWTWSGHTLRCLKVLTANENRAAIGFLDEAMPGRRQTASQIAFYNNQRERQWGVSPRDRQAVLAAFLARPIVMLKAA