Scaffold Ga0272428_1017103

Overview

Basic Information

• Taxon OID: 3300031520
• Scaffold ID: Ga0272428_1017103
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8105
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.57

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058866	Metagenome / Metatranscriptome	134	Y
F096938	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272428_10171033	F058866	AGG	VSLSAHQEESQLERPPDYADYRPARTTAEGGATMLLSGVFLAGAIVALGLAVYTKLADVRTFGQIQNLLMFGVALLLIATYLLVWEIALRLIARSDE
Ga0272428_10171035	F096938	AGG	MRDAARPLVSLRSPLPLMVAAIGVTILVIAIVTLPPRPNPPDASQTANLGDAEALTLVAREMRSGDAAARVLNDGQVRFNDGTWYVSVGGAHFHFTQRNRIIVADDQLAIDLQYR