Scaffold Ga0272428_1002839

Overview

Basic Information

• Taxon OID: 3300031520
• Scaffold ID: Ga0272428_1002839
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33076
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (73.53%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.57

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024440	Metagenome / Metatranscriptome	206	Y
F025800	Metagenome / Metatranscriptome	200	Y
F030705	Metagenome / Metatranscriptome	184	Y
F064532	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272428_100283915	F064532	AGTAG	MQQQGDNAARLAVLNELRRSALETYGDERSADANVETALHVTAAALWRVSQEPLEPLGDEPLPTHG
Ga0272428_100283921	F030705	GAG	MEAAQLHQTWIRRFDTQHRRRPRPPEIEAERLRLVRRLQLVQRLQSEATDGEQLIVRLRHYSAAPREARLVEGDQPFLTALLQTWEAAQLPQASTLAAGANPPKPSGTVEFRW
Ga0272428_100283930	F024440	GAGG	VAGDFSAELLALPRCVSPSRTLLGSEQMAPTHLYAHWREAVPPLRLNLAEARVSNGVVHIGDHVRELPAPHHIQPCACTLCREMPEAERVVRVHAIGSRDGTVYLVLPGAYECPALEVERIEG
Ga0272428_10028396	F025800	GGAG	MLQPIVRTFVLADLKCYLCGATAGSLERERGTTTPQVAIERAGNVASMVAWETSRLRCPRCGGSVYVDQVEIVDRRTEPVEWEDDGPRRGRPPKWLVEQRRRKRGLDAT