Scaffold Ga0272428_1002112

Overview

Basic Information

• Taxon OID: 3300031520
• Scaffold ID: Ga0272428_1002112
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40163
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (62.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.57

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050384	Metagenome / Metatranscriptome	145	Y
F074638	Metagenome / Metatranscriptome	119	Y
F098964	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272428_100211210	F098964	GGAGG	MTIVRLHRHAPEAQSATTCALCGTADVQAVTDHIQVGTPGTPQQDAGVCDACGRVLDNMVDKFGGDLTVMVEEAQQQASEREITVPGVQPNNRTTSE
Ga0272428_100211215	F074638	AGGAGG	MGATPADTEREITRLRGDMSAAIEEIERRVRGGLRGMASADARLTSARARVDVVDRARVDVVDRARVDVVERARDNPTLLGVGGVVAAGALAYGAYALVNNLRERRKPQNRLKRGVRNVRDELSGRVDRLGEGVDESRRQLGSAWQHGLLLKLDPEDGGYVRVSDAKVEPLKKNAKKRGQSGVIKKFVWAGLLSVFMALGSVVARRVADIAWRAMLREEPPTEKTKVKA
Ga0272428_100211223	F050384	N/A	MLAFVKCHVTSAAKWEILRILASNDGAWLQADQLARSSHRQPASLSQALAELAADGVLEMQAAAAPAEARYRLPADEPTSVVLHRLIESATHSLELRAIIAAHLQHVR