Scaffold Ga0272428_1001620

Overview

Basic Information

• Taxon OID: 3300031520
• Scaffold ID: Ga0272428_1001620
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 47432
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (86.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.57

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002897	Metagenome / Metatranscriptome	522	Y
F012689	Metagenome / Metatranscriptome	278	Y
F017679	Metagenome	239	Y
F028885	Metagenome / Metatranscriptome	190	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272428_10016202	F028885	GAG	MWILVFLLDLLGRKNFLRFLAGWVLIMLFFLYCFVHDAFDQPKATQRAMIPQMQHSLVKPAPARASEH
Ga0272428_100162020	F012689	AGGAGG	MQNSKKVQCDLSGASIDLIGGEPLAGSGFETEKPDPTFSAAELEGEE
Ga0272428_10016205	F017679	AGG	MDTTPQPRRKKSRSDLVHLRSLSSTQPATKIGQVAWAWAEIEAGLTAGMKLKEVWEAASRDGLVMSYSQFRVYISRLRRRRQRSAESQPQPLPPLANDATDTPASSADDPFKNLRELREKKKQSGFEYDPFSVNKSLID
Ga0272428_10016206	F002897	GGAGG	MAQRAIRFSEMTDKGIQEATRTRGFSSPTAFIRHSVERELSGRSEELVGAEERLAASIEQIRREVFRLGRAQQALFAFVDSLAKVLLTCVPEPGGEAMEAAVARARGRHARLLKSAGQAMVGDSQLAMQDLVTRGEG