Scaffold Ga0272428_1001026

Overview

Basic Information

• Taxon OID: 3300031520
• Scaffold ID: Ga0272428_1001026
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 62625
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (28.89%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.57

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007459	Metagenome	350	Y
F015284	Metagenome	255	Y
F015552	Metagenome	253	Y
F020636	Metagenome	222	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272428_100102621	F015552	N/A	MTQLALNAKISNITKITSFFVNYNKEFNLFEKERKHLLTQLVIERIATLKKIHNNISNMQKKSIKY
Ga0272428_100102622	F007459	N/A	MYFNCSIVNFFLHAIICEYLISLLIIINIKSYLFLIIKFVNLSNLIIKFMITLSYNDLNN
Ga0272428_100102623	F020636	N/A	MFRRNLKNNLKNEIMCDDKFINDMFDFIEVVIDFNNKLYKRVIKKQYN
Ga0272428_100102628	F020636	GAG	MIMFXRNFKNNLKNEIMRDNKFINDMFDLIEVFINFDNKLYKRAIKKRYN
Ga0272428_100102630	F015284	N/A	LFNYNILKINKNESLLANKHKLNVILRILKDNKKEFLIKKEKLQIFIDKIDECIKKYYDKSLQKHLKVIKTL
Ga0272428_100102631	F007459	N/A	MYFNCFAINFFLHAITYKYLISLLIIINIKLYLSSIAKFVDLNNLIIKFIITLFHNDSSN
Ga0272428_100102632	F015552	GAG	MTQLTLNAKISNITKITLFFVNYNKEFNLFKKEQKHLLTQLIIERIAILKKIYDNISKMQEKLIKY