Scaffold Ga0272428_1000853

Overview

Basic Information

• Taxon OID: 3300031520
• Scaffold ID: Ga0272428_1000853
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 69621
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (30.95%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.57

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010658	Metagenome	300	Y
F015552	Metagenome	253	Y
F020636	Metagenome	222	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272428_100085310	F015552	N/A	MIQLALNAKISNITKIILFFANYDKESNLFENERQHLFAQLVIERVTMLKKIQNNISFMQKKLIKY
Ga0272428_10008533	F015552	N/A	MTQLALNAKISNIIKITSFFVNYNKELNLFKKERKHLLAQSIIERIATLKKIYDNILKMQKKLVKY
Ga0272428_10008536	F020636	N/A	MFRQDFKNNLKNEIMRDDKFISDMFDFIEVVIDFDDKLYKRIIKKRYD
Ga0272428_10008537	F020636	N/A	MFQRNSKNNLKNEIMRNDKFISDIFDLIEIIIDFDDKLYKRIMKKRYN
Ga0272428_10008538	F010658	N/A	MIDFNAINNFMIKALVKREEYFIRRKSNAYNLVIVDENSLFAKNKRVNKETKSLLIAI