Scaffold Ga0272428_1000048

Overview

Basic Information

• Taxon OID: 3300031520
• Scaffold ID: Ga0272428_1000048
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 211416
• Total Scaffold Genes: 213
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 141 (66.20%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.57

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018372	Metagenome / Metatranscriptome	235	Y
F029053	Metagenome / Metatranscriptome	189	Y
F036291	Metagenome / Metatranscriptome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272428_1000048181	F029053	N/A	MDDETPEMESLSQEMRQVMAAWVADPKNELLQRQYRELQRRYQRLFLNFKQGQRNGVA
Ga0272428_100004827	F018372	GAG	VHVGRAGDAGRCPSCHEKLTPTAQLSQLLARWYQPRRWRADLVRPSVPYLVERLWTANGQGQRLYEGVSPKYANYDIFRHFVTKLMVQGIDEGWAQLSFPEDPLAEDPQYELKIVDSEKFASGVERLFPEVDWNEPIAAELAERLQPPAATEAVAAAGRPKRKKR
Ga0272428_100004856	F036291	N/A	MGWYIALYLVGMLGGLAASIAFDVQLRRPGIRQGVGLVMFAFLVWGALAVSGHAFTDVLLPSVWVGTGLLAGLGSREPRQVRLAGQ