NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307488_10319158

Scaffold Ga0307488_10319158


Overview

Basic Information
Taxon OID3300031519 Open in IMG/M
Scaffold IDGa0307488_10319158 Open in IMG/M
Source Dataset NameSea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)992
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.3731Long. (o)-156.5049Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033765Metagenome176N
F052939Metagenome142Y
F106097Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0307488_103191581F106097N/AMNRQQMIDILLEENVNGNWTNEYYFEKDNIHMVWCEAVELWLMLNYKTFPKTFESSCTLEEAFKYTFADQLSDEGIKEFLD
Ga0307488_103191582F033765AGGTGGMESLLRTILDECEKNKLMYRANACELWNHGATDMIVPWGYDFEALAESFKEFEHDERLGNIQILPASEVQTHAELIKSIRQNAIEDCGCQEQELNIKAMTDEAIINDYPDEYYSGRYWIMWTNYGGNEHTDCFTDYTTGLDQYFDVSKLTDEWEDQYIDFKLGLI
Ga0307488_103191583F052939N/AMETEINMNIEQQIIEQIFDTLMQNDKNPDHFNFATDLRYDHFINYNPETPTISLVVEKEGRPTKYKVSIREVA

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