Scaffold Ga0307488_10134699

Overview

Basic Information

• Taxon OID: 3300031519
• Scaffold ID: Ga0307488_10134699
• Source Dataset Name: Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1750
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 71.3731
  • Long. (^o): -156.5049
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030251	Metagenome	186	N
F092744	Metagenome	107	N
F105929	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307488_101346991	F105929	AGGA	MTTFTGYIARETEKAYGILINLTDEKLAWIPKKKIEKETRAELAAVVVMAGETIQRKVWLTDLEIDTEWFNKV
Ga0307488_101346992	F092744	AGGAGG	MATITTLETFTAKNHPTISVELSKLTKRKSANVYIVSFLDAMHNQEVTLGRYRSLTEAKEGFDLHKKAAQWGELYA
Ga0307488_101346994	F030251	GGGGG	MLSTDSFPPVRMATFPAQQREISMVKRTPFIGTPLWIIFERDGEPEPQEIARFRDFYLANDCFDTLVEEAKNEG