Scaffold Ga0307488_10102253

Overview

Basic Information

• Taxon OID: 3300031519
• Scaffold ID: Ga0307488_10102253
• Source Dataset Name: Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2088
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 71.3731
  • Long. (^o): -156.5049
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039871	Metagenome / Metatranscriptome	163	Y
F049292	Metagenome	147	Y
F055275	Metagenome / Metatranscriptome	139	Y
F079342	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307488_101022532	F055275	GAG	MEETDITFTMNERSIRALHSAVVFTLDKWAGQGDLDQECLIGIKSSLQGCLFEFNFDRSPEA
Ga0307488_101022533	F079342	AGGAG	MSNIHIMSVERAREKVARARKELERARIMDTHYRGVEYTPLSKATETHGTYVYRGRTYTK
Ga0307488_101022536	F039871	AGTAGG	VRIDLRKFFEAYEGSPHQLAAIDQLSDSIPDELLDKFSDWVVCFEVDGEVQPLVEYSHKGYIMKEPWRYT
Ga0307488_101022537	F049292	N/A	MIELAVGPVLALLISLKFTQQIQEKQDKQYKELAETVSMIVTKSELSDKETLQKIMQTVMPIAKAVNKLNQEVGL