Scaffold Ga0307488_10074629

Overview

Basic Information

• Taxon OID: 3300031519
• Scaffold ID: Ga0307488_10074629
• Source Dataset Name: Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2540
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 71.3731
  • Long. (^o): -156.5049
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022285	Metagenome	215	Y
F034719	Metagenome	174	Y
F059371	Metagenome	134	Y
F101914	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307488_100746292	F022285	AGGA	MKIVKTPQTIVKWGHEDVTVLELFKELDKLVASSVRTMHEMDGDMYMSDYRNLCEAQWKISSTLDLLKKKYNDV
Ga0307488_100746293	F101914	AGGAGG	MANNWTCSNCGCVHWEELVPISCIMCDNGTFHDSPDKFYKKDFETQTNYVKDKENEDS
Ga0307488_100746296	F034719	AGGA	MRRQSDKEWDYDAIDKQRNEDWGGIHKLVTDHAVEKRVTAEEIYKRNSIFYNHIEINKL
Ga0307488_100746299	F059371	AGGAG	MFLLLLFPLMFGVVNADALNKFKEEQDKGAEWHYVGEQDKDINAESIAINGKIYYKLKWK