Scaffold Ga0307488_10066607

Overview

Basic Information

• Taxon OID: 3300031519
• Scaffold ID: Ga0307488_10066607
• Source Dataset Name: Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2724
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 71.3731
  • Long. (^o): -156.5049
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005105	Metagenome / Metatranscriptome	412	Y
F007826	Metagenome	344	Y
F015027	Metagenome / Metatranscriptome	258	Y
F030601	Metagenome	185	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307488_1006660710	F007826	AGGAGG	MNKKTTFTFKLLNLIKKCREKGKFQLASKLIDKYKINREKLAEDYYD
Ga0307488_1006660711	F030601	GGA	MYMPGIKDGATGKKELDTTVIELIKRILRLKTIHRDRGTYSATGDSLDLSDDGQPSDDSRRPLGESTVRGGVSQDDKPKQPIFVNEDPEYCKHLAKFFKGEK
Ga0307488_100666077	F005105	N/A	MARKICDRCMGNGYRRIWKDQTESEKITIQCTKCESAGEIDEEPNYDNNGFGTDKLQ
Ga0307488_100666079	F015027	AGGAG	MQDKLYEATKKEVMSEHEEYVNADVPKQVWVDRNKYLHEHVNKLTDEIIELRKDNKRLTKELNDKEEHVNFLRRSGAI