Scaffold Ga0307488_10055339

Overview

Basic Information

• Taxon OID: 3300031519
• Scaffold ID: Ga0307488_10055339
• Source Dataset Name: Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3050
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 71.3731
  • Long. (^o): -156.5049
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033113	Metagenome / Metatranscriptome	178	Y
F037814	Metagenome / Metatranscriptome	167	N
F060352	Metagenome / Metatranscriptome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307488_100553391	F060352	GGAGG	MKKKVSKLKKGSVFICSVCSKGFVHVKPDTLVGKLGPIPVQFCKPCFKKVMKHDHLALNDTRRKVA
Ga0307488_100553396	F037814	AGGAG	MEISLVISTVMLLVMLVSFTYMLKELKECQKIIKSMKRRSKKYMKEVVSND
Ga0307488_100553398	F033113	AGGAG	MDNSKKYQRQIVIFIEGIDGIKRHEFVHGTLYLKLEEDRDCDFIHTEIRKFYKGYIDPEGGVNMYAVGDEFAFDFVPEDRETPAFDDEDESPAFPSYEEKGVWSEFAEDEQYNNMPDEVDIMLSLEADAKEGK