Scaffold Ga0307488_10043915

Overview

Basic Information

• Taxon OID: 3300031519
• Scaffold ID: Ga0307488_10043915
• Source Dataset Name: Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3501
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (14.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 71.3731
  • Long. (^o): -156.5049
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001802	Metagenome / Metatranscriptome	632	Y
F007611	Metagenome / Metatranscriptome	348	Y
F057680	Metagenome / Metatranscriptome	136	Y
F076516	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307488_1004391511	F076516	N/A	MKTKEELEQSVVMLEEALQSGLTQSKVAQADLTIAKQQLADINKPELTGSQLDDIQEAVEKAIGEFDFDDADNYDKEFELDYDGRVQLSTLDFTNSQELIEAVVEKVTKLFVEIEDEDND
Ga0307488_1004391512	F057680	N/A	MTRLIDKVKPEVLRALDRHCKPHYPTSHRMIITSLQDIYHYRDLTIEQVNNLITFLPSEFKPKGDLDMFYGDNILLGKYIIK
Ga0307488_100439154	F007611	N/A	MKKKWITVLDYSSGRVFQYQVSINKHAEEYIIFKKHRLKDVEWMEHNDSRLITN
Ga0307488_100439155	F001802	GGA	MNMKTIKHLKNDYVQLDNLIYRPYKVCDLPQNFGCIEFKEKEGISEWFNYKGFTYLFEKMAKS