Scaffold Ga0307488_10026056

Overview

Basic Information

• Taxon OID: 3300031519
• Scaffold ID: Ga0307488_10026056
• Source Dataset Name: Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4679
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium TMED211 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 71.3731
  • Long. (^o): -156.5049
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001521	Metagenome / Metatranscriptome	679	Y
F007645	Metagenome / Metatranscriptome	347	Y
F020608	Metagenome / Metatranscriptome	223	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307488_1002605611	F001521	GGAGG	MKLWITELIEDNTTAIGPYIKAETIAQANRIAIQYGLLVLGEIQELEHEVKLEERIVH
Ga0307488_100260564	F007645	GGAG	MAKIVYGKRDTATVVSIEKAPQSIQTLWNASNVLGVNIVRVRANKERYETTAGDTFNGYHAGRVSIYQQKPNPRNPLHFVRRTPLGKDNKGMQILEVATNIDVQDTLKVVSDYEYYTANSFFARLKMTFTRLFA
Ga0307488_100260567	F020608	GGAG	MKSKCKNPNGLSNMKAIQDAKSNSPKFNSLQKATRYINELGYVFKVRNSIREDRSVIYRHKFTKKGHVFLKSSYDFLSAGSMEMGTVWTIEQF