Scaffold Ga0307488_10025368

Overview

Basic Information

• Taxon OID: 3300031519
• Scaffold ID: Ga0307488_10025368
• Source Dataset Name: Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4746
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 71.3731
  • Long. (^o): -156.5049
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024584	Metagenome	205	N
F050674	Metagenome	145	N
F060351	Metagenome	133	N
F087764	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307488_100253682	F060351	N/A	MTTKYDDMVWKILGGMPIEVFDEDDDTVWENETWELVKVRTEGDYKDSRAIGSANLITALNMVHQRLLVDGTKSDDITALSHDIFNNILDKFTEDKLIRKRPENIRKTFQLV
Ga0307488_100253683	F024584	GAGG	MYFKLVSKNGYRDLVRNARRICVSQLSEEEKSVAFVELYGILKEKLFESTRSLNVEAAYADRCIHWNQRDIDQIKPMTNMRNPWLRFKREFEQCLDGKMPSKNVEIALAWFYAAPYRDDWIAS
Ga0307488_100253684	F050674	AGAAGG	VDRIVSPLNAIGYSDWGIKRTIREAENVSRWNPWKCHEWMEEARDRMDLDNLFFREYDGAVRRINNYWHMLPRFRHHNPDEFWKRDKVSYPPTYLELMVDDSDW
Ga0307488_100253685	F087764	AGGA	MKRPTISEAKTFFYQNAPFVMDEYEDMKEDYGEFFAARYIIEILIDYNKNEKDKVIGG