Scaffold Ga0307488_10021985

Overview

Basic Information

• Taxon OID: 3300031519
• Scaffold ID: Ga0307488_10021985
• Source Dataset Name: Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5133
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 71.3731
  • Long. (^o): -156.5049
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035290	Metagenome / Metatranscriptome	172	N
F087234	Metagenome / Metatranscriptome	110	N
F094525	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307488_1002198510	F094525	AGG	MITIEGRTFPLTQKKEAVAFLEGMLYDLDRHALVVVSGYGMLLDDFNQLKEFLDNAECAIIH
Ga0307488_100219853	F087234	GGA	MSRCRACNNAMTDTEMRRKDPNSGDYTDFCSSCLVVSIEALLEMDGMVTDVDMIQLLDEKEVAYISEDDIMRYVQTDYDFEDNY
Ga0307488_100219858	F035290	AGGA	MNIEKDICDYYLEVYHWDHTLVDSVVTKKEKNVLAFIGLYKDFDLEFEDQLIILTELRENLISAYMNWPDGEVTVTLVIKEECVNL