Basic Information | |
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Taxon OID | 3300031519 Open in IMG/M |
Scaffold ID | Ga0307488_10018639 Open in IMG/M |
Source Dataset Name | Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5613 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (81.82%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Alaska | |||||||
Coordinates | Lat. (o) | 71.3731 | Long. (o) | -156.5049 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F079234 | Metagenome | 116 | N |
F083275 | Metagenome | 113 | N |
Protein ID | Family | RBS | Sequence |
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Ga0307488_100186392 | F079234 | AGGAG | MVIFQKLNELKDHGDTLGYYRFVVNFYLEPRPNYGSEVRFAVEYRATESDSTEYRYFTRDKFEDTDLAFEEAREFVLNMPSLDEHRRQDAVRRSEAYEERILEDAAHEDDPILKQHLLDKAAREASDRKQLLGLFYKQGYHITAQ |
Ga0307488_100186394 | F083275 | AGG | MALVRNLLGGQRMTTPQEAGQTLGNAIKFQLEFMMLMLHSDRNDEAARSYDRIIALCDQAGQPVRKDAA |
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