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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031519 Open in IMG/M |
| Scaffold ID | Ga0307488_10010979 Open in IMG/M |
| Source Dataset Name | Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7332 |
| Total Scaffold Genes | 15 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (86.67%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Alaska | |||||||
| Coordinates | Lat. (o) | 71.3731 | Long. (o) | -156.5049 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000302 | Metagenome / Metatranscriptome | 1337 | Y |
| F000681 | Metagenome / Metatranscriptome | 939 | Y |
| F000724 | Metagenome / Metatranscriptome | 919 | Y |
| F000896 | Metagenome / Metatranscriptome | 845 | Y |
| F014790 | Metagenome / Metatranscriptome | 260 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0307488_100109791 | F000681 | N/A | NEKISKADLEKELSTHYTGETGLVINLMSYAIQDGIVETRHELGVANEELWSLNDWPEGEGFGSSDRFEYVRRITETVASERKFLQVEDELVQINKLDECPKNDTVRKYMIMNEEIRQGLTQGGK |
| Ga0307488_1001097910 | F000896 | AGGAG | MTNKINLVINLSILALLIYLSVAVKQIQDKVFPDPHIMQPAIGYGESLGLRSNLHKLLNNVLEDAINKQERQ |
| Ga0307488_1001097912 | F000302 | GGAGG | MVAVISQDTKEKIRDLEGQKIILEDRLEHLGYANNLVKMYEVEEQIFEIEDTIKKLIG |
| Ga0307488_1001097914 | F014790 | AGGAG | MDNKNTRKILLFIDGIGGINRQEMVHGTLYLKLDNDRDCDFIHTEIRKFYREFINPEGGVNMYAVGDEFAFDFVPEEREAPVFSDEDYSGKEDMMPSDVDKGIWSEFAEEEMFNNMDDEDESPAFPSYYDLPEDVDTALDLEADAKEGR |
| Ga0307488_100109794 | F000724 | AGGAGG | MPNKKENTWTMGNKGPTGPWVWHAWIKGSKKPVRVVAFDMDHIRCQLEGKQVIKAKRLPEEKDEFSSMPLGPKGSTINRPADYDQGFRILREWIDQNAGPPEEIRVKLRELYIDYDKAKQKTTRYSARKKKRHKI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |