Scaffold Ga0307488_10005326

Overview

Basic Information

• Taxon OID: 3300031519
• Scaffold ID: Ga0307488_10005326
• Source Dataset Name: Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10635
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (14.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 71.3731
  • Long. (^o): -156.5049
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008425	Metagenome / Metatranscriptome	333	Y
F017499	Metagenome / Metatranscriptome	240	Y
F024797	Metagenome / Metatranscriptome	204	Y
F032332	Metagenome	180	Y
F051263	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307488_1000532625	F051263	N/A	MNISNFKLFSLTEADKHEFNPNETAERLKRREQQNIERFRAAQEREDAFGVTYYKYRIAIDKIDLQKLKLQTQIHQLKQKYKK
Ga0307488_1000532627	F024797	N/A	MSEFFRTQMGRKLIDGDIPKLVNVLERIANQMEKKNKLEEKKFILEEKIQKLSIRESKNK
Ga0307488_1000532628	F008425	N/A	MSTKDITYKQFVDYMDKGNKVYMKKPKSWQKIWFWWESKREKWFLNKAFEKREGGRVITEKSVWITAKQMESHLDFMKRQGYKYHIDE
Ga0307488_1000532631	F032332	N/A	MEQGSGFNDEFIRSLLLNLEHSDFNQFMDLSYHVLMQSPSAVLKRGDSIKTKIESIDGLIKYFESIEEYEKCTNLQKLKSMLFLNTSFDDDDDS
Ga0307488_100053265	F017499	N/A	MSRYNSRMHGVETDNLHVDINWGFDHVLGYWYDIIETKDGEETIIEEWSTKLNGGSRGKMLEFLIKYNLSEEHRSMVALDMEF