Scaffold Ga0307488

Basic Information
Taxon OID	3300031519 Open in IMG/M
Scaffold ID	Ga0307488_10002677 Open in IMG/M
Source Dataset Name	Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031519 Open in IMG/M

Scaffold ID

Ga0307488_10002677 Open in IMG/M

Source Dataset Name

Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15021
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (10.71%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

15021

Total Scaffold Genes

28 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (10.71%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Alaska
Coordinates	Lat. (^o)	71.3731	Long. (^o)	-156.5049	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Alaska

Coordinates

Lat. (^o)

71.3731

Long. (^o)

-156.5049

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F015210	Metagenome / Metatranscriptome	256	Y
F024797	Metagenome / Metatranscriptome	204	Y
F041804	Metagenome / Metatranscriptome	159	Y
F042621	Metagenome / Metatranscriptome	158	Y
F054413	Metagenome / Metatranscriptome	140	N
F059985	Metagenome / Metatranscriptome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307488_1000267716	F024797	N/A	MSEFLRTGIGRKLLEKDIPKLTSVLERIADQLERSNKLEEKKFILEEKIQKLTLKESNIKSQRPNNLLGL
Ga0307488_1000267721	F015210	N/A	MELFENYKKWGKDITVFDVDDTLIITKSKIKVFNPTTGFSIDLTPQEFNTFKIKPHDKFDFNDFRDLEILKAGKIIDWVFNILKRTIAKGKAVGIITARDNSKLIYDFLLYNGVDINPNFIFAINDPSLGFTGSTAQKKKGAFMKFVKMGFRNFKFFDDDKENIRIANSLNKDLRGVKMKATLIKQKWIPNFSDFK
Ga0307488_1000267723	F041804	AGG	LVIEALTFKLSLDFFVYLKKYKITVSKIRVGFYDNVAQKTEFTDFYSIEEMELFYQNNYVPFDNCLVGDLVSIELFLGASNLYEFITEYRAEDLTGNFKLTQGSSFDLQRNSQRSVLVNRQVAFINSAVEDYRKYWLQLYRIYTTGIYSPCYAEPGWSENTWYLNQLREAFTSRNNGDDFPYDDANIINEPPK
Ga0307488_1000267725	F042621	N/A	MENIEQEKLQWIKGEKFGTVETVKGIDNEWTLFVSGCRIATNLISEFLEPVHGAPLDFNNSPKPIAPKAINATPTPQSSPIRTLFDKQKKNDKVKLNLTFPIEVPKKAIYEIISSSFDTDEVNNELESFIKNQVSEDLILDSLFDSIKELIKTRYKID
Ga0307488_1000267727	F059985	N/A	MIKIVLEPARNGVIKKVIDDNHGGGREQWTSTDVFESNDEHRNKYEYIMRFFFELCEDIGLDCGNKFEKEVLKINTEWGTHYEPNKKEIESKIKELQAEIDILTEWKQT
Ga0307488_100026774	F054413	AGG	MLKKKYRRRNDDLIHSLNSIKRQTVVLSIEVVETSKIKDHLIYECDYLDNGTQKQVNIIAQDITEAMQKLEPYVGVGIPEPTANLILGSQLYQKVTDHDINI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307488_10002677

Overview

Ecosystem & Geography

Associated Families

Sequences