Scaffold Ga0307488_10002013

Overview

Basic Information

• Taxon OID: 3300031519
• Scaffold ID: Ga0307488_10002013
• Source Dataset Name: Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17137
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (15.79%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 71.3731
  • Long. (^o): -156.5049
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004606	Metagenome / Metatranscriptome	431	Y
F008190	Metagenome / Metatranscriptome	337	Y
F013783	Metagenome / Metatranscriptome	268	Y
F015210	Metagenome / Metatranscriptome	256	Y
F017335	Metagenome / Metatranscriptome	241	Y
F018962	Metagenome / Metatranscriptome	232	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307488_1000201312	F013783	N/A	LIIEGITFKLALEFFTFLKKNYITSTSIKVDFFDREKHQYLDFVDVAAMATYYNANYKPLNNCNLGDLVSIQFFLATSELYDFTTEFRALDVTANLKLESGSAYDRQRNAGRQVLIDRQVQLIKNAVTDYVKYYSQLKYIYITGIYSPCYAVPGWSENTWYLKSFRDAFTSSKNTSEFPYSDVNIEQFPPN
Ga0307488_1000201314	F015210	AGGA	MKRNDITIFDVDDTLVVTRSKIKVHNPSTGFSTELTPQEFNTFKKRPNDKMDFSDFQSIDILKAGKIIEWVFAILKRTIAKGKPVGIITARDDSSLIQQFLSHNGININPNYIFAINDPALQFKGSTANRKKEAFRKFIDMGFNNFTFFDDDRENINIANSLNKEPGITMKAKLIKQKWIPKFEDFKQK
Ga0307488_100020132	F017335	N/A	MNIRSLELKNKLSVEKTGEQYYDLSAPSFSYKRELGVKAVHYVTVDQAGRIDKISELYFGTGAYVDAICVVNNIFNPFSLSEGDILAIPQLQNEGLVYSRPNPASRPSETLAQYVNTDRQSDLDQSRIQRLIQKAKTKKAGVKAPIPPNMMQQGQVAKVYEGGKILLGANLPSRNNTNTQ
Ga0307488_100020134	F004606	GAG	MKAHRIFNKGQFVYCLLASHTNPNILLPVKGIILDSKWDPVNPLYQIRIIKFYDNMKFLSQHFFDMNFRHVFENRARKMILKSEDFKTAKALEDRLNDKDRERFYVVIESVMCTKTKVSLSGLFEKVQFYMISKNLKEIRDISTRPFFKGPLSLDSTKEFDVRYKKSWSDKFKSGGLNIDKYLNSLG
Ga0307488_100020135	F008190	AGGA	MEEHIEFNFIYSNDAVRVKAFLGSVPRSIECINYMDIFNKLTKNDFYQYEPSDAVVSSYLMRQLQNAISRNISTTIFYVLGNLDKETISGIQEYVETLSDKPITYKMYHSPDIIVNGTAELFADIIEFE
Ga0307488_100020136	F018962	N/A	MIKIILESARNGVIKKVIDDNYGGGKEHFTSTDVYESPDDHKAIQNNYIKRFFFDLCDDLGLNLGSKFDKDVLDINEKWGTHYEPNAKDIDYKIKKLKAELKELEEWKNI