Scaffold Ga0307488

Basic Information
Taxon OID	3300031519 Open in IMG/M
Scaffold ID	Ga0307488_10001344 Open in IMG/M
Source Dataset Name	Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031519 Open in IMG/M

Scaffold ID

Ga0307488_10001344 Open in IMG/M

Source Dataset Name

Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	20557
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (10.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

20557

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (10.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Alaska
Coordinates	Lat. (^o)	71.3731	Long. (^o)	-156.5049	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Alaska

Coordinates

Lat. (^o)

71.3731

Long. (^o)

-156.5049

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008190	Metagenome / Metatranscriptome	337	Y
F017335	Metagenome / Metatranscriptome	241	Y
F018962	Metagenome / Metatranscriptome	232	Y
F022460	Metagenome / Metatranscriptome	214	Y
F048317	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307488_1000134417	F048317	N/A	MIRDMYSRDETTANYSATTLEVSDTLSQLVLKIENVLFTRKGDVLGSPGMGCNLDELIFSIVLNESTIQNTINAQIAAYCLPIAAGFAVSTKVQFFSTLERNGALVDIYVNERRVLGALF
Ga0307488_1000134419	F022460	AGG	MATVKDKRTGFPSLYRATYEEGWVLKNTGYDYSKNLLNITMSKYMFKNKHIRKFLEEYLTPIMVFYINKVKYIRIFYNFAVPKWYQKIN
Ga0307488_100013445	F018962	N/A	MIKIVLESARNGVIKKVIDDNYGGGKEHFTSTDVYESTEERNSTENTYIKRFFFDLCDDLGLELGSKFDKDVLDINTGWGSHYEPTVKDIESKIKNLKIELEQLKEWKNI
Ga0307488_100013446	F008190	GAG	MEEHIEFNFIYSDDALRVKTFLGNVPRSIECINYMDIFNKLTKNDYYQYEPSDAVVSSYLMRQLQNAINRNISTTIFYVLGNLNKDTISGIQDYVGSLSNKTITYKIYHSPDIMVNGTAELFDDIIEFE
Ga0307488_100013449	F017335	N/A	MNIKSLELKNRLSIEETGEQYYDLSAPSFRYKRELGVKALHYVTVDQAGRIDKISEMYFGTGAYIDAICIVNGIFNPFTVSEGDVLAIPQLKREDLVYARPNAASRPSESLAQYVNTDRQSVQDQSRIQRLTQLAKTKKNGVKAPIPPNMMQQGQVAKVYKGGKILLGANLPSRNSTNTE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307488_10001344

Overview

Ecosystem & Geography

Associated Families

Sequences