Scaffold Ga0307488

Basic Information
Taxon OID	3300031519 Open in IMG/M
Scaffold ID	Ga0307488_10000163 Open in IMG/M
Source Dataset Name	Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031519 Open in IMG/M

Scaffold ID

Ga0307488_10000163 Open in IMG/M

Source Dataset Name

Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	50202
Total Scaffold Genes	39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (69.23%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

50202

Total Scaffold Genes

39 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

27 (69.23%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Alaska
Coordinates	Lat. (^o)	71.3731	Long. (^o)	-156.5049	Alt. (m)	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Alaska

Coordinates

Lat. (^o)

71.3731

Long. (^o)

-156.5049

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009241	Metagenome / Metatranscriptome	321	Y
F011254	Metagenome / Metatranscriptome	293	Y
F030243	Metagenome / Metatranscriptome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307488_1000016310	F011254	N/A	MQVRISTKNNTQIMCKDLDSEIVTHNQTFELAPTWHKIIIPLQRTDVTDIEIGGESIKHCLNSGVNTDNGYEIWLHGNPAEYFSRISKCIAQEDLLRFKNLKNKYLITESWNETVEGDFIPTSVKQFFATGEGPYWYPKDDFHNLPYIEYDGDVDTDIELDEDLQFIDTKFYGQGQCKSLKPQPVLPTIRLDQIKNQKLRNTMQQFGFTDILQMQYVELQPNSVLPIHRDDFTYEDGKSIIDGPTQLYCVLSGDSKGIKFKFKNVGLIDVSKPIFINNCRFVHSLVYTGNIPRGVLLAYGIRQAR
Ga0307488_100001633	F030243	GGAG	MSIICHGCSFTRYKWACWPNFVKWFTEAEVHNNGFSASGNETIARGVVNSVMKHKNIEHMYIMWSGSDRYEVIHDKEEKLEHNLATYSRFDPDFDWCVWFGGHPDIKKHKEYQKHFLNERHNWYRTLERILYTQMFLEKHNVKYTMMVYKADVLQHKNLSNSENALYKQIDWAKFKFYKDKLGMWEFAHELYPEEFAEASDQHPLPLTHYHWVKDIMFESDIEPPEGEYRKLTQWKILNLRKKY
Ga0307488_1000016330	F009241	N/A	MLRISKKKLIKVLKGELDEPAISKQTLLNQLAKPVTQEEWLKGYKRWKKHIEEHTISTPLSEYEAIENIGKKRKRRKNVNN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307488_10000163

Overview

Ecosystem & Geography

Associated Families

Sequences