Scaffold Ga0307488_10000112

Overview

Basic Information

• Taxon OID: 3300031519
• Scaffold ID: Ga0307488_10000112
• Source Dataset Name: Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 56722
• Total Scaffold Genes: 95
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (28.42%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 71.3731
  • Long. (^o): -156.5049
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007770	Metagenome	345	Y
F016956	Metagenome / Metatranscriptome	243	Y
F039679	Metagenome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307488_1000011280	F016956	N/A	MINTIETWQAPKKAQLAIIDLAITHIKKVISNPEVKTEGDNFDYWNSYDLGDGNYIDYNIYCGDDWCVLKQDGSGEYEFTDPSTWSWGVACYAVDPPTKENKYHQIDTGREQYLFSYNNSYGNFEVEFDD
Ga0307488_1000011282	F007770	GAG	MSGEGHTTSFKRTTQTTKSNKQLLEEFKDLAYSSKRVTSHMKWYGKEHSVELVEHGDEEQPKWRQESVAIKDTFEFYISTYESWYRDANNYECHETEGSFVSLAREFAHNNKLMYFPDGFPAEWIEQEIIDGEKHWNHYNVKSDDKNIDKICEVYYDYGMAKLKEDNKEFWYQARDKIKQLMENRYECEYAR
Ga0307488_1000011285	F039679	N/A	MSVKDSHLTIREDLVKEGLSVPVWFLDYKEDTHVEDTTTLNIDCDYCTDGEELNPWGANIIVKITDPNQVDKYGEPWKDRLAFAMSVDFDWN