NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307488_10000005

Scaffold Ga0307488_10000005


Overview

Basic Information
Taxon OID3300031519 Open in IMG/M
Scaffold IDGa0307488_10000005 Open in IMG/M
Source Dataset NameSea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)181663
Total Scaffold Genes223 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (16.14%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Associated Families10

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.3731Long. (o)-156.5049Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002033Metagenome / Metatranscriptome601Y
F006798Metagenome / Metatranscriptome364Y
F008190Metagenome / Metatranscriptome337Y
F010105Metagenome / Metatranscriptome308Y
F013783Metagenome / Metatranscriptome268Y
F017499Metagenome / Metatranscriptome240Y
F021804Metagenome / Metatranscriptome217Y
F038691Metagenome / Metatranscriptome165Y
F059026Metagenome / Metatranscriptome134N
F076611Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0307488_10000005141F006798GGAMAMNLQYISEESVQQFIDGMDEVTTESLLEDPGVEELLTGSVPPQIQEHDNPLGTIESFLQLFIDREEYEICAKLVEVHPELCKN
Ga0307488_10000005146F017499N/AMSRYNSRMHGVTEDNVHVDLNWGFDDVLGYWYDIIETRDGEQTIIEDWSSTVNGGTRSTMLEFLIKYNCPKEHRSMVALDMAF
Ga0307488_10000005180F013783N/ALILEGITFKLALDFFTFLKKNKITSTSIKVDFFNRVKHEYIDFADVTAMEVYYSTNYSPLNNCNLGDLVSISFFLATSNLYDFTTEFKAMDVTNNLKLETGSAYDRQRKAGRQVFIDRQIQLIKNAVTDYVKYYSELKYIYVTGIYSPCYAVPGWSENTWYLKSFREAFISPKDTSQFPYNDVKIEEFPPN
Ga0307488_10000005185F008190AGGAMEEHIEFNFIYSSDALRVKTFLGKVPRSIECINYMDIFNKLTKNDFYQYEPSDAVVSSYLMRQLQNAIGRNISTTIFYVLGNLNKETVGGIQSYVESLSDKPITYTIYHSPDITVNGTAELFDDIIEFE
Ga0307488_10000005203F076611N/AMAEKLLDKASYSLVRTNPKLTGNVKVVSDGTDIYLESFSANTRLASQKFKAFKVDGSSTYDRDVFRFFDFGKFPKEAAYEIFQEYEDDAVLSKYGNQYEMFYCAGTRSVASEAYSQSLATLAPLWLNDQMPNYFVVFRLDNPAAVNNFRAATENANTVNAQTSAEFSKNVLENCTAIKTFDLTESTPLGSYIRNYRNQETFPEVPLNVSWRKDEPILWNGISYKSGGFTSTGNFAYNDIIGKDSTIIQDEYLFTQGFQNNGILLANLLNMEFLFDDPTAEDYSINRYFGMYVNDIEEGRFDISGEAFYKNTEKTQLPKITTITEVSQDLNTPFTITNEQGILLFLDPLKTETITGLPTPTRVDEVESIFYVKDKEDDFHTIKKGAIWGKNQIRLFDTEVDVSLFTGYKDPDTFANASIINRAGVAQMYIKVLDNIEDGFSITFYDGSSVTGKIFANSTLAPIPGKSFERFFNPNGTIQEVAQSITSAINNGIDENVRFFVASYNDSTVYVKSRFSGNRFNRMGFLLDIQFPEAFSQLQTYPLTTLVSPSNTFVGGNDVKNSLLKVELGDQDRFTPGEFVQTTGGYAVIGDWVPYTDEPIYNGFNEIIGYTDIDKYAIITCNDDEIIVTRSNQVALYSDYKPSFGRFSFFEVRDFDFNFYSTMYSEEGELDFEFKEYNQTTPGIVPLQYTGVSSNPQIRNFYDNGGFYNLIGLLNDAEDQNPNDEYIKSEYVRLEENFLTSQAAASRIAPYINKWGWVNDGKDVRNHPYRLDVNEAFGLNNFAPSKWDKIQEASGYSHEWYYLSEFPEYFTNDAIESSWSYCVKAPTDNIEANLFTGQVFVPGTFQNVNINYFDEYFIVQKFDFGNSNIVEIDRQLRYGRFSGGNEDNFAEAFLRGVRIIAKPKSIGTEKPDFNARSLSYVRDGSFNDYRFSVIMVPNLPDSPPFEIKFIKNEKWKTIVMFISIEYAVKCLNDNTKSIIDRTSLYSLNSNWAVNPATCAPQNIPNPYTNTTVSGAIALTQSYLEPSGDIIVKWQPDKDGVLPDLINDIRILEDGTYGEIKFTIGFDIFVINGIINIENFNTLRVAANGFTKNGNVQSIPSSSPNNVELRAATYQINKGGYLQYTDRLNSASFGEMFDAVNQGNPSVIYETIATDGSQLRNNDGSLAQTFSIELRAQADILKAIYVGVLPDPAKPTAFNLTDVVGYDLSLQKKPRLVPIARHAGYYAPYALPLLSFRDPYQNLDFNDVTGGTGTSLIPDADYKIKVAELCKYKNAQFYSKDPTFGQVQNFFYHKVNEQDPSTVLELSRESAFPSLYPLINEIGIDYKDFYAFSSNWEPSYFIKSIDKSQIQKIIGTRSMLERKSFFGSKYLKVPETIILETFKPDPFVKGAIRQPSLIDGTFMYLDQPSVTINKKTIQREGVVSTRSIKKKPSAPVINFYLFNQKRLMEHLFTPIKEQFLKYVNELYGWGNLETLDDDVNQYIRENILKLYKVEKVELYTLASRTKGGSTYTTAELTDAQKINNGLTINNNVASKTLNTNPFDLRLIYNKRTGFSESFGFSVTIVKK
Ga0307488_10000005220F010105N/AMEHLHTYESLNESKKLDTIKKQVLDFAEKNGKSKWGDLQKFILTLKGLDPNDRDNRGQFSSYFSGGSSWQSKGKDTKLGRDANSHGLLMRPTKQDPRYLEKDGKDYIVKVWDGKSKLA
Ga0307488_1000000562F002033N/AMNKFNKFFAEHGIKIIIVIMVLTYFKSCSIDSEVERIKKEQRILTTEIDTLSSQIVNQEEMIYLIETVPAWKTLRIEEISDKERISINALEEKDN
Ga0307488_100000058F021804N/AMMLPKTLNTAKLKVKYVLGNHTTLPHYPDTEDILFELIRDYCGKVAKEIKFTDISMAKRWNLSKEECNILLKELLKHKFLEISLQNSAYTTYEVIYNPYQ
Ga0307488_1000000588F038691AGTAGMGFHRRHIDNDQVIRFYNDGGVERIRSWYTRGVDALITETGLASQVGSILSDDEWRQIGTVRQDEEIIKIIQQHLGVEDIKK
Ga0307488_1000000589F059026N/AMEHIKDYKLFKESLNTEVLNEAFSSGILRDLSSQSRGKWGGNLAKDMQKYASLALDKISDSDFTTTSPEAYWKGGDAKNPNKIGFFVDDDPGFIKWAKANKKYLPGDLTLGNISKYGIVLSVVRGGAGMWHGFATDRGGSYSRHRKGTEERYGLLAKEYDTNGVYRGYEGKNVVAKVTRKNLIDIATRVYVLDLDSLRDKYDVSGLTSDRANAKSGATALKDAKTIKKENQARYDAILTDRAAMTDVDKSVKDSIELLNQHISDALKDGTMDKFGNLTIGEDPRGRSIKITDGANYIKNLLDDYQRYKDYERQDKEAKADGREDNWHAREIKNYAKRIQDRARAVKAKNYAW
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Biomedical Sciences Research Center "Alexander Fleming"
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