Scaffold Ga0308389_1004380

Overview

Basic Information

• Taxon OID: 3300031518
• Scaffold ID: Ga0308389_1004380
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20040719_148
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7744
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Thermofonsia Clade 3 bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5387
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044245	Metagenome / Metatranscriptome	154	N
F049463	Metagenome / Metatranscriptome	146	N
F068330	Metagenome / Metatranscriptome	124	N
F076974	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308389_10043801	F044245	N/A	PLLKKMNRTDAMVMSAILFAFRLHQQTGKYFYLSDAKIMEWTGFKRTAIYEARKRLEAEGWLIVKRGHGGHNMYMITDAVMARLEEADGQSREQQQERLRKAAEKAVSELNVEQAIARIILTFILRTGRMPTKKALRRWIIAARKIRDHGYSAETIADLIRKEDRSLFALLKRIEQGAVKKKKRIEYEVTYDPERGWLAIPHEVEVVEQALEAINERL
Ga0308389_10043806	F049463	GGAG	MRKDFGNEYQKSSKTLTQLQMHELRADMPRVPVYILGKTPSLDDLNAFLAQFGCQTDLSLLRPVKVWANLEEDIINEADKVMAQFMQSDLESPVIVVILPPLVALAAALVARMKEKCPTLKVLVVHYRVEHEPHFLGFELFCG
Ga0308389_10043808	F068330	AGGAG	MNDKLMKKLTQVAQPEVLIKLGIGLFLFALWTALYELGMRYNQGAFLSMIVATGMVVVLIAHGIMACQPSPQMRLAHGSAFALHMVIAIALSAFYVLSKAPELERQVVNLIGEFVTLGRTFYSALFGIAIAISLSAHIVSMASRNPVSGSQQAIASLATNIAIVLAIITSSIHLYQFGAEIAKLDLLSRLSATIMADISFIAIKSNIQHQVERRQKNNRYDYFDLIVWALFGIIVSVYLILINSFVVRYTAGINDSGSLLSLVVSLYGMSPTVLLAGLAALTVLTKVVDRETAPKSGTRFDEQFATNGVASRQGVKM
Ga0308389_10043809	F076974	AGGTGG	MDNAKRRRGRPRKPATLEIDEFFAVLELLVENAKRHHMLESVLVTDGRLKVAFCVPLFGVTERLLSPRRDRLAESQSPTQLRMPL