Scaffold Ga0308392_1044469

Overview

Basic Information

• Taxon OID: 3300031517
• Scaffold ID: Ga0308392_1044469
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20050624_m2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1047
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006418	Metagenome / Metatranscriptome	373	Y
F010840	Metagenome / Metatranscriptome	298	Y
F051735	Metagenome / Metatranscriptome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308392_10444691	F006418	N/A	LKPQPAREIVVAEGEDYKIIFDRETRDYAVEYRGEPVGWRAYVEDARRLVEQLRYEDARRGAGEE
Ga0308392_10444692	F051735	GGAGG	MFRDVVLINGPVPKDGVADYERVRVKARPLGRPYAWDNGRAWNSYVTNGGFILVFECEDGTIYVQEIEWEVDPYPAADPSPRTYYYYERYNSLDEARAGGRGWLIEYALGNE
Ga0308392_10444693	F010840	AGGAG	MNLPFSQPLDKVTFGALAAATVIILTWALREFAGIDLPAEVQAALAVIFGYVVSYHIPLTEAE