Scaffold Ga0308392_1020928

Overview

Basic Information

• Taxon OID: 3300031517
• Scaffold ID: Ga0308392_1020928
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20050624_m2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1773
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000642	Metagenome / Metatranscriptome	965	Y
F000855	Metagenome / Metatranscriptome	859	Y
F002978	Metagenome / Metatranscriptome	516	Y
F011940	Metagenome / Metatranscriptome	285	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308392_10209282	F002978	GAGG	VGVRDWRVMLVPWADRRLWFLQARRGRRVVWGVVYDAADPDSVALARRAIATLRAAGADCSALPSPLPGVGQEP
Ga0308392_10209283	F000642	AGG	VQEISIALALCAVGAAVWYMRRREASGRVRGWLLLYDDLGGWRVLPAAYGDSGVVADGVTYPASLPVVRVDRTLVWIARCDAAALIEHQALERAREAAALASLWKGGGQWLDFLRIVGVVLPAAFAYATWAQVSALQSLVAQILALVGER
Ga0308392_10209285	F000855	GAGG	MDWLEDFWSKVVGWLDELSAAVHNGIIEWVNSLINVWNGWMDSLLHPAQAMPSNPALRWIVDWLGGIADYTRLMYMLVDYVAYAWIVQQALTAQIGIVIVGLGFRAWLVIRRVVLVS
Ga0308392_10209286	F011940	N/A	FDGLEALRRAVAPPAARICDLPAPVLADAPELHGMRDAFPDFVAGLCAFFGVASPVLGFVRLPVTLMVIGFAFWTAWRVFRSLS