Scaffold Ga0308392

Basic Information
Taxon OID	3300031517 Open in IMG/M
Scaffold ID	Ga0308392_1010030 Open in IMG/M
Source Dataset Name	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20050624_m2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20050624_m2

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2905
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

2905

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5341	Long. (^o)	-110.798	Alt. (m)	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.5341

Long. (^o)

-110.798

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004307	Metagenome / Metatranscriptome	444	Y
F005028	Metagenome / Metatranscriptome	414	Y
F008499	Metagenome / Metatranscriptome	332	Y
F025895	Metagenome / Metatranscriptome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308392_10100302	F004307	AGGA	MFKELISNGNHSERPELNGAYIGRFLGVKERQRPTFETRLSPEPTYEDVFVFEFEVVDPELDAPLRVSRWVRKPPRLDHPAKNGKVSNLYKTLAALYGVSVMSDEQLQNAEEFVQSAVGREYQLTIETKPSGWYEIVHIAPVRARRKEKQIDDVPF
Ga0308392_10100303	F008499	AGGA	MTYRSKSEPRWKRKEREALKALQALFGRVSDPSLARLLTSTGRVGHLTRFGVDGFVGDNPGFAVEVKARKRMLTKPTLDALLQTIDRAARYERIPLFVLVFGDDVPTRTENGARVDREWVMMPRRVLDELVGKNKGDGDA
Ga0308392_10100304	F005028	GGA	MRDDDLRAAMSFFAERLRGVDGDETRLLRWTRHKLRNDARAVAALMLHVGYRPTFIRYFLRYHVPTLRESAAVGETYTDPDAATEAHLGLCWRLDEEVLTVLSDLHAAAKRLRQPYRDLAAVCLKWGYVHETVVQLLAKALERKAKDVVED
Ga0308392_10100306	F025895	AGGGGG	MNDLIAWIIAGGVILALVNSNVADGLLSALDLSDNLKRAADWASGVRGFPAGVAAICFFVMAYVFGALAYRYDLVPTWRFMQPIANDVLATGAEWLTLFVVFLTLLPTLIEIAAAKLAQRDVRMLQWMVYFFIFFDLVTDYTEAVALVDIWQRSGLFAPLPDVIEGAAAVLVKVGWTFAASFAFEFLAVLFGATTLLLAANVRAASGGGGGGR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0308392_1010030

Overview

Ecosystem & Geography

Associated Families

Sequences